Microbial metagenomics in the Baltic Sea: Recent advancements and prospects for environmental monitoring

Metagenomics refers to the analysis of DNA from a whole community. Metagenomic sequencing of environmental DNA has greatly improved our knowledge of the identity and function of microorganisms in aquatic, terrestrial, and human biomes. Although open oceans have been the primary focus of studies on aquatic microbes, coastal and brackish ecosystems are now being surveyed. Here, we review so far published studies on microbes in the Baltic Sea, one of the world’s largest brackish water bodies, using high throughput sequencing of environmental DNA and RNA. Collectively the data illustrate that Baltic Sea microbes are unique and highly diverse, and well adapted to this brackish-water ecosystem, findings that represent a novel base-line knowledge necessary for monitoring purposes and a sustainable management. More specifically, the data relate to environmental drivers for microbial community composition and function, assessments of the microbial biodiversity, adaptations and role of microbes in the nitrogen cycle, and microbial genome assembly from metagenomic sequences. With these discoveries as background, prospects of using metagenomics for Baltic Sea environmental monitoring are discussed.     

The search for an alternative to piped water and sewer systems in the Alaskan Arctic

Forty-two communities in rural Alaska are considered unserved or underserved with water and sewer infrastructure. Many challenges exist to provide centralized piped water and sewer infrastructure to the homes, and they are exacerbated by decreasing capital funding. Unserved communities in rural Alaska experience higher rates of disease, supporting the recommendation that sanitation infrastructure should be provided. Organizations are pursuing alternative solutions to conventional piped water and sewer in order to maximize water use and reuse for public health. This paper reviews initiatives led by the State of Alaska, the Alaska Native Tribal Health Consortium, and the Yukon Kuskokwim Health Corporation to identify and develop potential long-term solutions appropriate and acceptable to rural communities. Future developments will likely evolve based on the lessons learned from the initiatives. Recommendations include Alaska-specific research needs, increased end-user participation in the design process, and integrated monitoring, evaluation, and information dissemination in future efforts.     

Living in an oasis: Rapid transformations,resilience, and resistance in the North Water Area societies and ecosystems

Based on lake sediment data, archaeological findings, and historical records, we describe rapid transformations, resilience and resistance in societies and ecosystems, and their interactions in the past in the North Water area related to changes in climate and historical events. Examples are the formation of the polynya itself and the early arrival of people, ca. 4500 years ago, and later major human immigrations (different societies, cultural encounters, or abandonment) from other regions in the Arctic. While the early immigrations had relatively modest and localised effect on the ecosystem, the later-incoming culture in the early thirteenth century was marked by extensive migrations into and out of the area and abrupt shifts in hunting technologies. This has had long-lasting consequences for the local lake ecosystems. Large natural transformations in the ecosystems have also occurred over relatively short time periods related to changes in the polynya. Finally, we discuss the future perspectives for the North Water area given the many threats, but also opportunities.     

Usability of non-standard lower anchor configurations for child restraint system (CRS) installation

Abstract

Objectives: The objective of this study was to determine whether the amount of tension required for proper child restraint system (CRS) installation varies with lower anchor spacing and to determine whether nonexperts can produce adequate tension on wider-than-standard lower anchor configurations.

Methods: CRSs were installed by certified child passenger safety technicians (CPSTs; n?=?6 subjects, n?=?72 installations) and nonexperts (n?=?30 subjects, n?=?120 installations) on a mock-up vehicle seat fixture with lower anchors set at 11 (standard), 15, 19, and 23 in. apart from one another. Each CPST installed a rear-facing (RF) infant base, RF convertible, and forward-facing (FF) convertible into each of the 4 spacing configurations in random order. The CPSTs were instructed to tighten the lower connector strap until the tension was exactly at the threshold between passing and failing the 1-in. test. Each nonexpert installed one CRS model into all 4 spacing conditions in random order. Nonexperts were instructed to install the CRS to the best of their ability. The tension produced on the lower connector strap was recorded via load cell in the lower anchor assembly of the vehicle seat. Resultant tension magnitudes were compared across spacing conditions using matched pair t-tests. The CPSTs’ mean 1-in. test threshold values were compared to tensions produced by nonexperts. Installations were visually evaluated for errors and qualitative usability feedback was collected via survey.

Results: CPSTs installed the infant base with higher tensions in the 15-, 19-, and 23-in. configurations compared to the standard 11-in. configuration (P = .034, .032, and .003, respectively). The nonexperts installed the infant base with higher tension in the 15- and 23-in. configurations compared to the 11-in. configuration (P = .004 and .026, respectively). The RF convertible and FF convertible installations showed no significant differences in tension among any of the spacing configurations for either group. Only 19% of the nonexperts’ installations were tight enough to pass CPST thresholds, and the pass rate did not vary with respect to lower anchor spacing. In feedback surveys, the nonexpert group did not show a consistent preference for either standard or wider-than-standard lower anchor configurations.

Conclusions: The amount of tension required to pass the 1-in. rule did not vary with lower anchor spacing configurations for the RF and FF convertible CRS, but the infant base required more tension in wider anchor configurations. Nonexperts tended to produce less than ideal tension in all configurations, although their tension magnitudes increased for the infant base in wider configurations.     

Benchmarking Optical/Thermal Satellite Imagery for Estimating Evapotranspiration and Soil Moisture in Decision Support Tools

Generally, one expects evapotranspiration (ET) maps derived from optical/thermal Landsat and MODIS satellite imagery to improve decision support tools and lead to superior decisions regarding water resources management. However, there is lack of supportive evidence to accept or reject this expectation. We “benchmark” three existing hydrologic decision support tools with the following benchmarks: annual ET for the ET Toolbox developed by the United States Bureau of Reclamation, predicted rainfall‐runoff hydrographs for the Gridded Surface/Subsurface Hydrologic Analysis model developed by the U.S. Army Corps of Engineers, and the average annual groundwater recharge for the Distributed Parameter Watershed Model used by Daniel B. Stephens & Associates. The conclusion of this benchmark study is that the use of NASA/USGS optical/thermal satellite imagery can considerably improve hydrologic decision support tools compared to their traditional implementations. The benefits of improved decision making, resulting from more accurate results of hydrologic support systems using optical/thermal satellite imagery, should substantially exceed the costs for acquiring such imagery and implementing the remote sensing algorithms. In fact, the value of reduced error in estimating average annual groundwater recharge in the San Gabriel Mountains, California alone, in terms of value of water, may be as large as $1 billion, more than sufficient to pay for one new Landsat satellite.     

Biodiversity resilience in the Central Indian Highlands is contingent on maintaining and recovering landscape connectivity: the tiger as a case study

Corridors (variably called landscape linkages, connectors, and gateways) are expanses of a landscape that facilitate the flow or movement of individuals, genes, and ecological processes. Protected areas with their buffer zones and the corridors that connect them are cornerstones of modern conservation actions to maintain the biodiversity we have and restore what we have lost. Policy and governance to guide the establishment and management of protected areas and supporting buffer zones is well established in the Central Indian Highlands. A policy and governance structure to create the context and enabling conditions for corridor maintenance, creation, and recovery is emerging but is constrained by the reigning land-management paradigm that separates conservation from development rather than mainstreaming species and habitat conservation into the rural development agenda. Well-nourished, healthy human populations and healthy ecosystems are inextricably linked. The worsening ecological conditions in the Central Indian Highlands can trigger the emergence of a common agenda for an inclusive, caring, and environment-friendly mode of development. The alternative is the business-as-usual scenario: a continuation of worsening ecological conditions. Entry points through the biodiversity, agriculture production, resource extraction, and economic/social sectors to enable integrated sustainable landscape management are identified. These include deepening what it means to successfully conserve a species combined with explicit threat analysis for at-risk tigers and the landscapes that supports them; landscape scenario modeling to advance communication by synthesizing diverse forms of research and articulating and evaluating alternative socio-economic futures; and the use of the smart green infrastructure process as an approach to development rather than only as a way to mitigate environmental damage. Models are presented to scale up from isolated conservation interventions to collective impact that unites supportive government partners with individuals, NGOs, and economic interests to achieve viable long-term relationships in human and natural systems to value, maintain, and recover landscape connectivity.     

A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations

Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.     

Utilizing international networks for accelerating research and learning in transformational sustainability science

A promising approach for addressing sustainability problems is to recognize the unique conditions of a particular place, such as problem features and solution capabilities, and adopt and adapt solutions developed at other places around the world. Therefore, research and teaching in international networks becomes critical, as it allows for accelerating learning by sharing problem understandings, successful solutions, and important contextual considerations. This article identifies eight distinct types of research and teaching collaborations in international networks that can support such accelerated learning. The four research types are, with increasing intensity of collaboration: (1) solution adoption; (2) solution consultation; (3) joint research on different problems; and (4) joint research on similar problems. The four teaching types are, with increasing intensity of collaboration: (1) adopted course; (2) course with visiting faculty; (3) joint course with traveling faculty; and (4) joint course with traveling students. The typology is illustrated by extending existing research and teaching projects on urban sustainability in the International Network of Programs in Sustainability, with partner universities from Europe, North America, Asia, and Africa. The article concludes with challenges and strategies for extending individual projects into collaborations in international networks.     

The effect of aged litter materials on polyatomic ion concentrations in fractionated suspended particulate matter from a broiler house

Inorganic emissions from livestock production and subsequent deposition of these ions can be a major source of pollution, causing nitrogen enrichment, eutrophication, acidification of soils and surface waters, and aerosol formation. In the poultry house, ammonia and hydrogen sulfide emissions can also adversely affect the health, performance, and welfare of both animals and human operators. The persistence and long life expectancy of ammonia, odors and toxic pollutants from poultry houses may be due to the ability of suspended particulate matter (SPM) to serve as carriers for odorous compounds such as ammonium ions and other inorganic compounds (e.g., phosphate, sulfate, nitrate, etc.). SPM is generated from the feed, animal manure, and the birds themselves. A large portion of odor associated with exhaust air from poultry houses is SPM that has absorbed odors from within the houses. Understanding the fate and transport processes of ammonia and other inorganic emissions in poultry houses is a necessary first step in utilizing the appropriate abatement strategies. In this study, the examination and characterization of ammonium ions, major components of odors and toxic gases from poultry operations, and other ions in suspended particulate matter in a broiler house were carried out using particle trap impactors. The SPM from the particle trap impactors was extracted and analyzed for its ionic species using ion chromatography (IC). The results showed concentrations of polyatomic ions in suspended particulate matter were found to increase with successive flocks and were highly concentrated in the larger size particulate matter. In addition, the ions concentrations appeared to reach a maximum at the middle of flock age (around the fourth week), tapering off toward the end in a given flock (possibly due to ventilation rates to cool off larger birds). Thus, it can be inferred that aged of bedding materials affects the ionic concentrations in aerosol particulate matter more than the age of the birds.

Implications: In the poultry house, toxic gas emissions can adversely affect the health, performance, and welfare of both animals and human operators. The persistence of these toxic pollutants from poultry houses may be due to the ability of suspended particulate matter (SPM) to serve as carriers for these compounds (inorganic ions). Our study showed that polyatomic ions in suspended particulate matter were found to increase with successive flocks and were highly concentrated in the larger size SPM. Understanding the effect of management practices on poultry air emissions will lead to innovative best management practices to safeguard the health and welfare of the animals as well as those of the poultry operators, along with reducing the impact of potential air pollution on the environment.